Public code repositories
Public code repositories from the lab are collected on
https://github.com/hamkerlab.
The neuro-simulator ANNarchy (Artificial Neural Networks architect) is available on Github:
https://github.com/ANNarchy/ANNarchy.
2022
Dinkelbach, H.Ü, Bouhlal, B.-E., Vitay, J., Hamker, F.H. (2022)
Auto-selection of an Optimal Sparse Matrix Format in the Neuro-simulator ANNarchy
Frontiers in Neuroinformatics, 16:877945. doi:10.3389/fninf.2022.877945.
Code: https://github.com/hamkerlab/Dinkelbach2022_ANNarchyAutoTuning
Maith, O., Dinkelbach, H.Ü, Baladron, J., Vitay, J., Hamker, F.H. (2022)
BOLD monitoring in the neural simulator ANNarchy
Frontiers in Neuroinformatics, 16. doi:10.3389/fninf.2022.790966.
Code: https://github.com/hamkerlab/Maith2021_ANNarchyBOLDmonitor
2021
Larisch, R., Teichmann, M., Gönner, L., Hamker, F.H. (2021)
Sensory coding and contrast invariance emerge from the control of plastic inhibition over emergent selectivity
PLOS Computational Biology, 17(11):e1009566. doi:10.1371/journal.pcbi.1009566.
Code: https://github.com/hamkerlab/Larisch2021_PLOSComBio
Teichmann, M., Larisch, R., Hamker, F.H. (2021)
Performance of biologically grounded models of the early visual system on standard object recognition tasks
Neural Networks, 144:210-228. doi:10.1016/j.neunet.2021.08.009.
Code: https://github.com/hamkerlab/Teichmann2021_NeuralNetworks
2020
Goenner, L., Maith, O., Koulouri, I., Baladron, J., Hamker, F.H. (2020)
A spiking model of basal ganglia dynamics in stopping behavior supported by Arkypallidal neurons
European Journal of Neuroscience, 53(7):2296-2321. doi:10.1111/ejn.15082.
Code: https://github.com/Olimaol/stopsignaltask_BG
2019
Schmid, K., Vitay, J., Hamker, F. H. (2019)
Forward Models in the Cerebellum using Reservoirs and Perturbation Learning
Conference on Cognitive Computational Neuroscience. 2019, Berlin, Germany, doi:10.32470/CCN.2019.1139-0.
Code: https://github.com/vitay/CerebellumForwardModel
Dinkelbach, H.Ü., Vitay, J., Hamker, F.H. (2019)
Scalable simulation of rate-coded and spiking neural networks on shared memory systems
Conference on Cognitive Computational Neuroscience, 13-16 September 2019, Berlin, Germany. doi:10.32470/CCN.2019.1109-0.
Code: https://github.com/hamkerlab/Dinkelback2019-ANNarchyBenchmark-CCN
2016
Vitay, J. (2016)
Robust timing and motor patterns by taming chaos in recurrent neural networks
ReScience 2(1), doi:10.5281/zenodo.159545.
Code: https://github.com/vitay/ReScience-submission/tree/vitay
2014
Vitay, J., Hamker, F.H. (2014)
Timing and expectation of reward: a neuro-computational model of the afferents to the ventral tegmental area
Frontiers in Neurorobotics, 8:4. doi:10.3389/fnbot.2014.00004.
Code: https://github.com/hamkerlab/Vitay2014-TimingReward
